Insertion junction: CLIP2.056789_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.056789
Chromosome:chromosome 10
Location:4092282
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g448250 (1 of 33) PF13855 - Leucine rich repeat (LRR_8) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGCGCAGGATCCGCGCTAGAGGTCGTTGGGGCTGGTGTAGGGACGACG
Internal bar code:ACTGGAGACATAATGTATTATC

Confirmation - LEAP-Seq

LEAP-Seq distance:2930
LEAP-Seq percent confirming:67.8571
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:AACACATTGTTCGCGTGTGG
Suggested primer 2:TCTCATCGGTCGTATGCGTG