Insertion junction: CLIP2.056934_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.056934
Chromosome:plastome
Location:74472
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802293 orf202 Wendy transposon CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATACCATCATGCTACCAGTCGTAGTAACTGGTTTGTTTTTAGGTAGTTAT
Internal bar code:TAATGGGAGTTGCCGTCGAAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:104
LEAP-Seq percent confirming:3.57143
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:27
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:GCGGTGCAGCTTGTGTTTTA
Suggested primer 2:GACACCTCCCTTTCACGGAG