Insertion junction: CLIP2.057002_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.057002
Chromosome:chromosome 12
Location:3394971
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497900 (1 of 5) IPR000104//IPR016024 - Antifreeze protein, type I // Armadillo-type fold 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAGTAGTGCATGAGGTCAACAAGCTTGTGAGGCTGAGTTGCAAGTGACC
Internal bar code:CAGGTGTCCCGCTGTGTTCGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1272
LEAP-Seq percent confirming:97.2222
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:CTTCGTACAGGAGGGGGAGA
Suggested primer 2:TCATTCACAGCGTCCAGTCC