Insertion junction: CLIP2.057136_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.057136
Chromosome:plastome
Location:102882
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802309 2716996,petG,ChreCp045 (1 of 1) K02640 - cytochrome b6-f complex subunit 5 (petG); cytochrome b6/f complex subunit V 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCCGTCCATAGAAGAAGAAAAGGTAAAACATTTTGATTGGGTTATAAA
Internal bar code:TCAGTTCTTTGGGGTCGAACCG

Confirmation - LEAP-Seq

LEAP-Seq distance:228
LEAP-Seq percent confirming:41.8605
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:25
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:GCCACTGCCGTCCTAAGTAA
Suggested primer 2:AGCTAACAAATCCCCGGCAA