Insertion junction: CLIP2.057176_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.057176
Chromosome:plastome
Location:96666
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802305 2716992,ChreCp041,rpoB2 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit II CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCACCTCCAATACTTGAAGCACTATCAGCTAATAAATCACCCACTTCAA
Internal bar code:CATTTTAGCACGGTTATGTTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:468
LEAP-Seq percent confirming:78.5714
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:AGATGTGACGCAGCCTTGAA
Suggested primer 2:TCAACAGCAGCTCCATCTGG