Insertion junction: CLIP2.057252_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.057252
Chromosome:chromosome 7
Location:4931929
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g346750 PUS14 (1 of 2) 5.4.99.28//5.4.99.29 - tRNA pseudouridine(32) synthase / Pseudouridine synthase RluA // 23S rRNA pseudouridine(746) synthase / 23S RNA Psi(746) synthase; RNA pseudouridine synthase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGACCACAGTAGATCACGTGGGCCGTGTCCGCGTCCGGCCCTGGCGCG
Internal bar code:CTGAAAATTAGAGGTTGAGTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1692
LEAP-Seq percent confirming:96.5517
LEAP-Seq n confirming:56
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:GCCAGTGACAGTGAAGTGGA
Suggested primer 2:CCTGCCCGCATGTTCAAAAA