Insertion junction: CLIP2.057321_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.057321
Chromosome:chromosome 6
Location:5229330
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g284000 (1 of 1) PTHR16019//PTHR16019:SF5 - SYNAPSE-ASSOCIATED PROTEIN // BSD DOMAIN-CONTAINING PROTEIN 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTTTTGCAACTGCTGCAACTTCCCTCCGCCCTCACTGCAACGCGCCCCA
Internal bar code:GTCGGGTAATAGACTCCCTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1586
LEAP-Seq percent confirming:86.0465
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGGATTCAGATGACGAGG
Suggested primer 2:TGCCATCACAGCCATCACAT