Insertion junction: CLIP2.057354_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.057354
Chromosome:chromosome 2
Location:4503020
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g106650 CDPK7 (1 of 6) PTHR24349//PTHR24349:SF23 - SERINE/THREONINE-PROTEIN KINASE // MAP KINASE-ACTIVATED PROTEIN KINASE 5; Calcium/calmodulin-dependent protein kinase 3'UTR
Cre02.g106700 OPR4,RAP1 OctotricoPeptide Repeat protein 4; (1 of 19) PTHR21228//PTHR21228:SF20 - FAST LEU-RICH DOMAIN-CONTAINING // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGTACGGTGCAGAGGAAAGCGGTCGAGAAGGAGATTGAAAGAACCGTTT
Internal bar code:TGGGCAGAGCTTAGCTATACTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1493
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:TGGTGCGTGTTTCGTCCATA
Suggested primer 2:TGACGGACTCGAGGGATGAT