Insertion junction: CLIP2.057416_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.057416
Chromosome:chromosome 3
Location:4582826
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g176450 (1 of 17) IPR029069 - HotDog domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAGAACAGCAGCAATAAGCGTCAGCACCCAAGAAGTGCTTGAAGGGCTT
Internal bar code:CGAGTGTGGTGCATATAACACG

Confirmation - LEAP-Seq

LEAP-Seq distance:245
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCTGCACAGACCTTGTTG
Suggested primer 2:CAATGAGCTGCTGCGGATTC