Insertion junction: CLIP2.057445_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.057445
Chromosome:chromosome 10
Location:1011368
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g424850 SPL5,PRP31 (1 of 1) K12844 - U4/U6 small nuclear ribonucleoprotein PRP31 (PRPF31); Pre-mRNA-splicing factor 5'UTR
Cre10.g424900 PHX13,PFH1 Prolyl 4-hydroxylase 1; (1 of 2) PTHR10869//PTHR10869:SF66 - PROLYL 4-HYDROXYLASE ALPHA SUBUNIT // OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN-RELATED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGGAAACTGAGCTCCGCGCACAGAGCCTTTGTTATTTGCCGCGTGACA
Internal bar code:AGTAGTAGGGCCTTAGGATAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1503
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGTCCGTACCAACCACAT
Suggested primer 2:GACAGACGGTCCATGTGTGT