Insertion junction: CLIP2.057531_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.057531
Chromosome:plastome
Location:51409
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802285 psbA,ChreCp021,2716969 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAATCCTAAGGTAAATGACGAGTTGAAGGTATAGTCTAAACTTAATAGA
Internal bar code:CATTCTGGGCTAGGGACATTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:116
LEAP-Seq percent confirming:17.3913
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTTCGGGCAAGTAAACT
Suggested primer 2:CCGGATCGTGCAGCTAGAAA