Insertion junction: CLIP2.057735_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.057735
Chromosome:plastome
Location:175246
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802329 ChreCp064,psbD,2716961 (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD); photosystem II protein D2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAAGGTGATTTC
Internal bar code:TTGATAGCCATGATCTGCAGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:221
LEAP-Seq percent confirming:31.4286
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGAATGTGTTAGCACCGT
Suggested primer 2:TAGGGGATAGGCCAGGCAAT