Insertion junction: CLIP2.057790_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.057790
Chromosome:plastome
Location:97227
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802306 2716993,ChreCp042,rpoB1 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit I 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACGCAGCCTTGAAGGGAGGTAGGTGTATTTATACCTCCCAAGGAAGAAT
Internal bar code:CGGTGTATTTGGGAATGCTAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:145
LEAP-Seq percent confirming:26.1905
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:31
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:TTCTTCAACCCAGCTGCCAA
Suggested primer 2:ACGATGATGCTAACCGTGCT