Insertion junction: CLIP2.057879_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.057879
Chromosome:plastome
Location:99815
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802306 2716993,ChreCp042,rpoB1 (1 of 2) K03043 - DNA-directed RNA polymerase subunit beta (rpoB); RNA polymerase beta subunit I CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTAAAAGTGTAAAAAAACTATTTCGTTGAATTTCAACAAAATCTGAAATC
Internal bar code:GCGTCCGTTTGAAAGGTAACGA

Confirmation - LEAP-Seq

LEAP-Seq distance:95
LEAP-Seq percent confirming:13.8889
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:31
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:TGGCGTGCATGTGTCTTAGT
Suggested primer 2:AAATAGCCGACCAAGCAGCT