Insertion junction: CLIP2.057906_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.057906
Chromosome:chromosome 9
Location:5775827
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre09.g801078 NAR1A (1 of 7) PTHR30520//PTHR30520:SF0 - FORMATE TRANSPORTER-RELATED // FORMATE TRANSPORTER 1-RELATED; Chloroplastic nitrite transporter intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTAGCGGCGGTAAGCCTCATGCACTGTAAGCGTGCAGGAACACACCAAT
Internal bar code:CTCACTTGGTAGATCGCGGACC

Confirmation - LEAP-Seq

LEAP-Seq distance:440
LEAP-Seq percent confirming:84.6154
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCACAACAACGTAGGTTT
Suggested primer 2:CTGTCACTGGCTCGTGAACT