Insertion junction: CLIP2.057998_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.057998
Chromosome:chromosome 17
Location:5601710
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre17.g739850 LRRC6,Seahorse,DNAAF11,MOT47 (1 of 8) PF14580 - Leucine-rich repeat (LRR_9); Leucine-rich repeat-containing protein 6 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGGCGCCCAACGGAGCCTGACGGGGTCCCGGCCCTCTTCCCACCCTCC
Internal bar code:TGTAATACGTCGGGAATGAGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:539
LEAP-Seq percent confirming:28.9855
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:49
LEAP-Seq n unique pos:69

Suggested primers for confirmation by PCR

Suggested primer 1:CCATATCGCCGTACTGCTGT
Suggested primer 2:CCCCCATCCCCTCTCACTTA