Insertion junction: CLIP2.058009_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.058009
Chromosome:chromosome 12
Location:8916007
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g545800 ROC55,ROC11 Rhythm Of Chloroplast 55; (1 of 24) IPR006553 - Leucine-rich repeat, cysteine-containing subtype 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCCACCGAATGCATCCCATCCACTGCTGTTACAGATGTCCACAGGGCG
Internal bar code:GCTTACCACATCGGATCTGAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1319
LEAP-Seq percent confirming:98.4375
LEAP-Seq n confirming:63
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:64

Suggested primers for confirmation by PCR

Suggested primer 1:CTGCGGTGTGAAAGTGTGTG
Suggested primer 2:CATTACCGCTCACCGCAATG