Insertion junction: CLIP2.058012_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.058012
Chromosome:chromosome 2
Location:8366625
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g142650 outside_mRNA
Cre02.g142700 (1 of 41) PF13920 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCAAGACTGCGAAGAACGGCCTCGCCACGGCCTGCACGCTGCGGCAGA
Internal bar code:ATAAGCTATAACGAAGCACGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:996
LEAP-Seq percent confirming:82.6087
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TCACGCGGACAAGCATTTTG
Suggested primer 2:AGGAGAAGACCAAAAGGCCG