Insertion junction: CLIP2.058017_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.058017
Chromosome:chromosome 1
Location:8215015
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g800146 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGGGGCGGAGCCCCCGGAAACTTTTTGGGGATGAAAGATGCGGCGGCAG
Internal bar code:CGTGCACTTTTCTGTCCCGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1761
LEAP-Seq percent confirming:51.7241
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:ACTTTGGGTGTCAGGCCAAA
Suggested primer 2:TGGCAGGAGGCGAAAGAAAT