Insertion junction: CLIP2.058028_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.058028
Chromosome:chromosome 3
Location:8539275
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g211297 5'UTR
Cre03.g211409 PPR15,mS106,MRPS106 Mitochondrial ribosomal protein S106, Chlamydomonas specific 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCTCTCTGTCTTGCAAGTTCCGGGCAGCACCGCGACTGCCAGCAGCCC
Internal bar code:GCGATGAAGTATTGTACCCATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1815
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TTGACGCCCTTCCTGGTTAC
Suggested primer 2:ACATCTTTCAAGGAGCGGGG