Insertion junction: CLIP2.058094_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.058094
Chromosome:chromosome 11
Location:2198393
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467725 5'UTR
Cre11.g467726 (1 of 1) K06316 - oligosaccharide translocation protein RFT1 (RFT1) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGGCCCCTCGCTCGCCACAGAGACTCGTCGCGAGGCAAACCAAAAGGT
Internal bar code:TACCTGTAAACCGTAGCCTATC

Confirmation - LEAP-Seq

LEAP-Seq distance:1744
LEAP-Seq percent confirming:95.3125
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:64

Suggested primers for confirmation by PCR

Suggested primer 1:ACGTTAGCGCAGAGTTGTCA
Suggested primer 2:CGTATCAGCATAGGGGCCTG