Insertion junction: CLIP2.058180_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.058180
Chromosome:chromosome 2
Location:8468886
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g142100 5'UTR
Cre02.g142150 (1 of 1) PF14770 - Transmembrane protein 18 (TMEM18) 3'UTR
lncRNA_TCONS_00137062 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTAACAACGAAAGTGGCCGCTTTACTGCTTCGCTTGGATGACATAGTAT
Internal bar code:AAGGTTGGTTCTGGTATAGGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1090
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:AATCGGGAGGCAACAGTCAG
Suggested primer 2:CTACCTCATCAGCTGCTCGG