Insertion junction: CLIP2.058193_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.058193
Chromosome:chromosome 9
Location:1277052
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g400800 (1 of 4) IPR000719//IPR001229//IPR002290//IPR011009//IPR020635 - Protein kinase domain // Jacalin-like lectin domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // Tyrosine-protein kinase, catalytic domain 5'UTR
Cre09.g400851 (1 of 781) IPR000104 - Antifreeze protein, type I 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATACAAACGTGTTTAGAGCACTCGTAAGCGAATACGCGGCACTTTGTCAC
Internal bar code:AGCATCGGCGGCGTTTTGTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2515
LEAP-Seq percent confirming:90.7407
LEAP-Seq n confirming:49
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:AATGGTCATGGGGCAGTCTG
Suggested primer 2:CGCATGAAAGGACCTCACCT