Insertion junction: CLIP2.058195_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.058195
Chromosome:chromosome 16
Location:792158
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g690700 (1 of 13) IPR000086//IPR015797 - NUDIX hydrolase domain // NUDIX hydrolase domain-like 3'UTR
Cre16.g690750 (1 of 18) PTHR10774 - EXTENDED SYNAPTOTAGMIN-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGAACGAAGAGCACGCTGACTGCACAATTAATTTCACAATGCCGTACG
Internal bar code:TTATTTCGGTTGAGTGTTTGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1515
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:ACCCCACCCCATTTGTGTTT
Suggested primer 2:TGGAGGAAGAGGACGAGGAG