Insertion junction: CLIP2.058202_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.058202
Chromosome:chromosome 9
Location:5544146
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g801075 5'UTR
lncRNA_TCONS_00156899 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTTGCATCGAACACGGTCAGCTTTCCGCGCAAGAATTTCAAAGTCGCGA
Internal bar code:AATACGTTCAATATTTCACCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2823
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:65
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTGGAAACCCTACACGAA
Suggested primer 2:CGGCAGCATTTCATACCAGC