Insertion junction: CLIP2.058338_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.058338
Chromosome:chromosome 12
Location:8573786
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g548700 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCACCTCGCCTTGCTGGTCATTTGCTCCCACGCTCGCTTTCGCAACCCCC
Internal bar code:CCGGTAAGTCCTTGGTACCGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1823
LEAP-Seq percent confirming:72.5
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:ACAACATGGAGAAGGGCCAG
Suggested primer 2:TTCATCCGCCATTCCTTGCT