Insertion junction: CLIP2.058450_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.058450
Chromosome:chromosome 17
Location:3940636
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g727950 RPN2 26S proteasome regulatory subunit; (1 of 1) K03032 - 26S proteasome regulatory subunit N2 (PSMD1, RPN2) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCTCGGACGCCTACGCGCCCGCGTCCCCGCCTTGTTTGTGAGCTGCCG
Internal bar code:CCAGGCTAATGTTATTTCGGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2045
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGGTGAGTTGCTTGGTTG
Suggested primer 2:CGAATTGGGGGTAGCAAGGT