Insertion junction: CLIP2.058477_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.058477
Chromosome:chromosome 17
Location:2406925
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g714400 (1 of 239) IPR016024 - Armadillo-type fold 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTTGGGGGGGGGCATTTTCAAGCAGCACGCACTGTGCCGCACAATGCCG
Internal bar code:GATCTTCACTACAGGCGCGCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2235
LEAP-Seq percent confirming:79.3651
LEAP-Seq n confirming:50
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:63

Suggested primers for confirmation by PCR

Suggested primer 1:CCACGCAATCAAGGCAAACA
Suggested primer 2:CCTTGGCATGTTTTCGCACA