Insertion junction: CLIP2.058523_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.058523
Chromosome:chromosome 3
Location:7512302
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g205400 (1 of 1) PF01344//PF07707 - Kelch motif (Kelch_1) // BTB And C-terminal Kelch (BACK) 3'UTR
lncRNA_TCONS_00115950 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGAGAGGCAGGATCCGTGTCGGTGTCGCCATGCGCAGCCCGCGTGTTCG
Internal bar code:CCGGACAGCAAATCCGGAATAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2735
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TGGATCCTTCAGCTGCCTTG
Suggested primer 2:TGCATTGAAGCCCATTCCCT