Insertion junction: CLIP2.058560_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.058560
Chromosome:chromosome 4
Location:3092700
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g225500 CSA6 (1 of 1) PF15066 - Cancer-associated gene protein 1 family (CAGE1); conserved protein of unknown function 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGAGTGAAACCGAGAAGTGGCCATTCTTGCAGGCCCCGCTCCAACCTTG
Internal bar code:TTTATTAGTGCCTGGCCGCTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1482
LEAP-Seq percent confirming:71.7391
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGAATGCCAGTAGGTGCT
Suggested primer 2:CACGGACAGTTGGTGCTAGT