Insertion junction: CLIP2.058626_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.058626
Chromosome:chromosome 3
Location:7450724
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g205850 MAE6,MFT6 MATE efflux family protein; (1 of 3) PTHR11206//PTHR11206:SF95 - MULTIDRUG RESISTANCE PROTEIN // MULTI ANTIMICROBIAL EXTRUSION FAMILY PROTEIN 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCATGATGGGCTGAAAGCTTACCATCCTCCTTGCTGCTGCTGATTCAGTA
Internal bar code:TTTGTTGGAGCTCTCGGAGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1282
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGGTGCACAGAAAAGCAG
Suggested primer 2:CTACTAGACGACGGTTCCGC