Insertion junction: CLIP2.058661_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.058661
Chromosome:chromosome 13
Location:2816842
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g801539 (1 of 1) PTHR14140:SF27 - PROTEIN SHISA-5 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATGGGCAGTGGTGTAGGTTCAGGGCTCCCCTGCATAGGCTCGTGTCAGG
Internal bar code:TATGAGGCCGGTGGAGGGAGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:385
LEAP-Seq percent confirming:96.5517
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CCGGAATGGTTTCTCTGCCT
Suggested primer 2:CCAAGCATTTTGGCAGTCCC