Insertion junction: CLIP2.058698_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.058698
Chromosome:chromosome 3
Location:6721530
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g196000 (1 of 1) PF05625 - PAXNEB protein (PAXNEB) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCAGCAGTTGTAAGGCGCACTAGACTGGATACATGCGTACGCCTCATC
Internal bar code:GGTTGACTCTGATCATCCCCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1649
LEAP-Seq percent confirming:73.913
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:GGACATGTTGATGGGGCTGA
Suggested primer 2:ACAGCAGCTTCCCTTGAGTC