Insertion junction: CLIP2.058736_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.058736
Chromosome:chromosome 9
Location:1088976
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401800 (1 of 4) 2.7.10.2//2.7.11.1//2.7.12.1 - Non-specific protein-tyrosine kinase / Cytoplasmic protein tyrosine kinase // Non-specific serine/threonine protein kinase / Threonine-specific protein kinase // Dual-specificity kinase outside_mRNA
Cre09.g800994 (1 of 8) IPR000719//IPR001245//IPR011009 - Protein kinase domain // Serine-threonine/tyrosine-protein kinase catalytic domain // Protein kinase-like domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCCCAGCTTTAACATGGCACGATTGGACACAGAGCCACGCCTGAACAAC
Internal bar code:TTGGCTCGTACCCGGTGCGTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1587
LEAP-Seq percent confirming:97.5309
LEAP-Seq n confirming:79
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:81

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAGGCTGCAGGAGATGTT
Suggested primer 2:CACACACTTGCACAGCTCAC