Insertion junction: CLIP2.058769_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.058769
Chromosome:chromosome 16
Location:3019757
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g664000 HLM25 (1 of 68) 2.1.1.43 - Histone-lysine N-methyltransferase / Protein-lysine N-methyltransferase; Histone-lysine N-methyltransferase 3'UTR
Cre16.g664050 (1 of 1) PF02893//PF16016 - GRAM domain (GRAM) // Domain of unknown function (DUF4782) (DUF4782) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATAATTTATAGCGAGCGGCGTGTACGCCACTGTTACGCCACATTATGAT
Internal bar code:TAGTTACGGCCTCTGGCGTCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2257
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:AGTACAGAACGAGCGTGCAA
Suggested primer 2:AGAACGTGGACGGGTAAACC