Insertion junction: CLIP2.058860_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.058860
Chromosome:chromosome 8
Location:214641
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre08.g358554 (1 of 14) 3.1.3.16//3.1.3.48 - Protein-serine/threonine phosphatase / Serine/threonine specific protein phosphatase // Protein-tyrosine-phosphatase / PTPase 5'UTR
Cre08.g358555 (1 of 2) PTHR10625//PTHR10625:SF131 - HISTONE DEACETYLASE // SUBFAMILY NOT NAMED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGAGTGACAGTAATAGCAATATGTACTTGTTCCTTTTCTAGCGCCAAGTT
Internal bar code:TAACCTATTTTCCCAAAACAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:488
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGCGAGGTGAAGGCAAAC
Suggested primer 2:TCACAGCCGCACACACTATT