Insertion junction: CLIP2.058879_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.058879
Chromosome:chromosome 13
Location:2746583
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g582150 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 3'UTR
Cre13.g582201 (1 of 1) PTHR13622//PTHR13622:SF8 - THIAMIN PYROPHOSPHOKINASE // THIAMIN PYROPHOSPHOKINASE 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTTGCCCCACCATCTCGCTTACTTGTGTCGGAAGTAAAAGCGGCGGTGG
Internal bar code:TAAGGCGGCTGAGGTTAGTAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1739
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GTCACGGATACACGCATTGC
Suggested primer 2:GTGTTGGTGAGGCGTAGTGA