Insertion junction: CLIP2.058924_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.058924
Chromosome:chromosome 5
Location:2629628
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre05.g239978 (1 of 1) PTHR36116//PTHR36116:SF1 - FAMILY NOT NAMED // UPF0060 MEMBRANE PROTEIN YNFA intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGAGTGGCGGTCCGCGGTCACGTGCGCAGCGCCAGGGGTGTCAAGCGAC
Internal bar code:GGTTTATTGCGGTACTGAGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:492
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:TACATCCGACCCCACTAGCA
Suggested primer 2:AGTCGCCTGTATCGGGTTTG