Insertion junction: CLIP2.059069_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.059069
Chromosome:chromosome 1
Location:3355319
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g021750 (1 of 1) PF07818 - HCNGP-like protein (HCNGP) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGTTGCAAATGCGACAGTAGGTGGCACTCGCACCGCCGTGGTGAAGAT
Internal bar code:AGTTAAACTTTTTAGTGGAAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1933
LEAP-Seq percent confirming:68.0
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:GATAGCCCCGCAGATAACCC
Suggested primer 2:CATGTTATGACTGCGCCGTG