Insertion junction: CLIP2.059075_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.059075
Chromosome:chromosome 13
Location:4585674
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g603450 (1 of 4) PF14159 - CAAD domains of cyanobacterial aminoacyl-tRNA synthetase (CAAD) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGGATATGCTTCTATTGCGGGAGTAGGCACGAGGCGCAGACTTGCGGT
Internal bar code:ATTATACAGTGGATTTTGTTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2100
LEAP-Seq percent confirming:96.7213
LEAP-Seq n confirming:59
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:61

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCATATCGACCATTCGCA
Suggested primer 2:TCCTTCATCTCGTCACCCCT