Insertion junction: CLIP2.059085_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.059085
Chromosome:chromosome 1
Location:4221334
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g028450 (1 of 1) PTHR30544//PTHR30544:SF2 - 23S RRNA METHYLTRANSFERASE // SUBFAMILY NOT NAMED 5'UTR
Cre01.g028500 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTAAATATTATTATGTGAAGGCCCACACAGTAGTGAATACCATCCAGAAG
Internal bar code:GTCTCGGCAGATGCGCCCCCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:721
LEAP-Seq percent confirming:48.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGTGAAAGCAGAGGGGTG
Suggested primer 2:GCGTGCTTCTTGTTTGGAGG