Insertion junction: CLIP2.059117_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.059117
Chromosome:chromosome 10
Location:3301174
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g443100 (1 of 1) IPR001214//IPR023220 - SET domain // Type IV secretion system, VirB5-domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTGTGAGGGAGCGTGCGGGTGGGCCTCGTGTTGCAGGCTAAGGCCGCCC
Internal bar code:GGCGCGTAGGAGTGAGGGTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:686
LEAP-Seq percent confirming:77.7778
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCGGTGTGTTCAGAGAGT
Suggested primer 2:TGGATGCTGGTGTCACAGTC