Insertion junction: CLIP2.059175_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.059175
Chromosome:chromosome 13
Location:2640939
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g581150 NAT30 (1 of 36) PF00583 - Acetyltransferase (GNAT) family (Acetyltransf_1); N-acetyltransferase 5'UTR
Cre13.g581200 (1 of 1) PTHR12241//PTHR12241:SF1 - TUBULIN TYROSINE LIGASE-RELATED // TUBULIN--TYROSINE LIGASE PBY1-RELATED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTTATAACCCTCTTAATGTTGTGTATGTGAACTGCTGCCATAGTCACAT
Internal bar code:ATAATCGATTATGTATCAGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2433
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:45
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:GCATCACTTGACGCGTACAC
Suggested primer 2:CGAATCTCCCCTGGAATCCG