Insertion junction: CLIP2.059180_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.059180
Chromosome:chromosome 7
Location:1147629
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g320850 (1 of 2) 3.2.1.21 - Beta-glucosidase / Gentobiase 3'UTR
Cre07.g320900 (1 of 1) PTHR20883//PTHR20883:SF5 - PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCTCTGGGGGATACCAACCAAACAGAGAGCGCCCTGTGACCCTATCATG
Internal bar code:CACTGAGATATACCGAAAGAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3860
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:GTACGGTGGTGTGTCTCCTG
Suggested primer 2:GATTGGGCGCATGACGTTAC