Insertion junction: CLIP2.059197_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.059197
Chromosome:chromosome 14
Location:3475285
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre14.g630550 DEG1B,DEG13,DEG12 Deg protease; (1 of 3) PTHR22939//PTHR22939:SF81 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 1, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTGAGAAAAGAGGGAGGAGGGGGAGGAGGAGAGGGGGTTGCAAGGATG
Internal bar code:CCTTTAATTAGGTTGCGTATGA

Confirmation - LEAP-Seq

LEAP-Seq distance:638
LEAP-Seq percent confirming:86.6667
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:GGGCACGGACAGTTTGAGTA
Suggested primer 2:CAGTGTGGTCAACATCAGCG