Insertion junction: CLIP2.059232_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.059232
Chromosome:plastome
Location:4827
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802264 petD,ChreCp002,2717021 cytochrome b6/f complex subunit 4; (1 of 1) K02637 - cytochrome b6-f complex subunit 4 (petD) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAACCAGGGCTTGCCCAATCAACAATTTAAAGCTTATTTAGTTTTATTG
Internal bar code:TCACCCACTAGTTGAAAGATGT

Confirmation - LEAP-Seq

LEAP-Seq distance:82
LEAP-Seq percent confirming:42.8571
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:GTACCGTGATAAGGCCTGCA
Suggested primer 2:CCCCTTCGGGCAAGTAAACT