Insertion junction: CLIP2.059254_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.059254
Chromosome:chromosome 4
Location:4072537
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g233202 (1 of 14) PF04577 - Protein of unknown function (DUF563) (DUF563) 3'UTR
Cre04.g233302 (1 of 2) PTHR23132//PTHR23132:SF9 - D-ALANINE--D-ALANINE LIGASE // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGTCCTCGTATAGTATGTGCAATGCGGCATCATGGATTCACGTCACTCA
Internal bar code:TTAATAAATATCCTACCTTTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:698
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CAATCTTTACTCGTGCCGCG
Suggested primer 2:GGTCTCAGTGTGCTCAAGCT