Insertion junction: CLIP2.059264_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.059264
Chromosome:chromosome 9
Location:485307
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g800982 (1 of 4) PF01844 - HNH endonuclease (HNH) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATATGTATGTTAGCACTTGCTCCGTCCATGCCCACTACTATAAACACAC
Internal bar code:GTAAATGACCCCAGACGCTTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1233
LEAP-Seq percent confirming:81.25
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:AACCATATCCTGCCACGCAA
Suggested primer 2:CTGCGGGAAGGTACGTAGTC