Insertion junction: CLIP2.059398_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.059398
Chromosome:chromosome 3
Location:5979463
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g189300 PLAP10,PLP10 (1 of 17) PF04755 - PAP_fibrillin (PAP_fibrillin); Plastid lipid associated protein 10 5'UTR
Cre03.g189350 (1 of 1) PTHR36352:SF1 - EXPRESSED PROTEIN 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTTGTGTTTTACCATATCATGCGGTTTTATCGCCTGCGCCGCTTGTAAT
Internal bar code:CAAAGTTCGGAAACGAAGCCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1061
LEAP-Seq percent confirming:86.2069
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:ACAGCAACGAGGCGAAGTTA
Suggested primer 2:CTATGATGTCGCCCGGTACC