Insertion junction: CLIP2.059466_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.059466
Chromosome:chromosome 14
Location:609917
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g611950 PPR-superfamily protein 3'UTR
lncRNA_TCONS_00189627 3'UTR
lncRNA_TCONS_00191355 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCAAGGAAAGAGGGCCCCGGTCAAGCTCCTATTCCCTGCCTGTCTGCC
Internal bar code:GTTTAAGTACGTCCGAAAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1186
LEAP-Seq percent confirming:94.7368
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGCGTCGTACGTGTGAGA
Suggested primer 2:ACACGACATTGTACTGCGGT